Following power shell can be used to disable resource throttling on a particular list.
$web = Get-SPWeb -Identity http://intranet.contoso.com/sites/contracts
$web.AllowUnsafeUpdates = $True
$list = $web.Lists["Projects"]
$list.EnableThrottling = $False
$list.Update()
$web.AllowUnsafeUpdates = $False
$list.EnableThrottling
$web.Update()
$web.Dispose()